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clpipe command line option
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clpipe-bids-bids_validate command line option
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clpipe-bids_validate command line option
- -c, [1]
- -config_file, [1]
- -d, [1]
- -debug, [1]
- -interactive, [1]
- -log_dir, [1]
- -s, [1]
- -submit, [1]
- -v, [1]
- -verbose, [1]
- BIDS_DIR, [1]
-
clpipe-config-get_default command line option
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clpipe-config-update command line option
-
clpipe-convert2bids command line option
- -BIDS_dir, [1]
- -c, [1]
- -config_file, [1]
- -conv_config_file, [1]
- -d, [1]
- -dcm2bids, [1]
- -debug, [1]
- -dicom_dir, [1]
- -dicom_dir_format, [1]
- -heudiconv, [1]
- -i, [1]
- -log_dir, [1]
- -longitudinal, [1]
- -o, [1]
- -overwrite, [1]
- -s, [1]
- -session, [1]
- -subject, [1]
- -submit, [1]
- SUBJECTS, [1]
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clpipe-dicom-convert2bids command line option
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clpipe-dicom-flywheel_sync command line option
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clpipe-flywheel_sync command line option
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clpipe-glm-apply_mumford command line option
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clpipe-glm-fsl_onset_extract command line option
- -c, [1], [2], [3], [4]
- -config_file, [1], [2], [3], [4]
- -d, [1], [2], [3], [4]
- -debug, [1], [2], [3], [4]
- -g, [1], [2], [3], [4]
- -glm_config_file, [1], [2], [3], [4]
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clpipe-glm-get_default_config command line option
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clpipe-glm-launch command line option
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clpipe-glm-prepare command line option
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clpipe-glm-report_outliers command line option
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clpipe-postprocess command line option
- -batch, [1]
- -c, [1]
- -cache, [1]
- -config_file, [1]
- -d, [1]
- -debug, [1]
- -fmriprep_dir, [1]
- -i, [1]
- -index_dir, [1]
- -log_dir, [1]
- -no-batch, [1]
- -no-cache, [1]
- -o, [1]
- -output_dir, [1]
- -p, [1]
- -processing_stream, [1]
- -r, [1]
- -refresh_index, [1]
- -s, [1]
- -submit, [1]
- SUBJECTS, [1]
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clpipe-preprocess command line option
- -bids_dir, [1]
- -c, [1]
- -config_file, [1]
- -d, [1]
- -debug, [1]
- -i, [1]
- -log_dir, [1]
- -o, [1]
- -output_dir, [1]
- -s, [1]
- -submit, [1]
- -working_dir, [1]
- SUBJECTS, [1]
-
clpipe-project_setup command line option
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clpipe-reports-fmriprep command line option
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clpipe-roi-extract command line option
- -atlas_name, [1]
- -c, [1]
- -config_file, [1]
- -custom_atlas, [1]
- -custom_label, [1]
- -custom_type, [1]
- -d, [1]
- -debug, [1]
- -i, [1]
- -log_output_dir, [1]
- -o, [1]
- -output_dir, [1]
- -overlap_ok, [1]
- -overwrite, [1]
- -s, [1]
- -single, [1]
- -sphere_radius, [1]
- -submit, [1]
- -target_dir, [1]
- -target_suffix, [1]
- -task, [1]
- SUBJECTS, [1]
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clpipe-status command line option
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clpipe-templateflow_setup command line option
- columns (clpipe.config.options.ConfoundOptions attribute)
- commandline_opts (clpipe.config.options.FMRIPrepOptions attribute)
- ConfoundOptions (class in clpipe.config.options)
- ConfoundRegression (class in clpipe.config.options)
- contributors (clpipe.config.options.ProjectOptions attribute)
- conversion_config (clpipe.config.options.Convert2BIDSOptions attribute)
- convert2bids (clpipe.config.options.ProjectOptions attribute)
- Convert2BIDSOptions (class in clpipe.config.options)
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